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anbrooks / juncBASE

Junction Based Analysis of Splicing Events for RNA-Seq
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Error when running build_DB_FromGTF.py #11

Open sneha100895 opened 5 years ago

sneha100895 commented 5 years ago

Hi,

I am getting the following error when running build_DB_FromGTF.py

Traceback (most recent call last): File "build_DB_FromGTF.py", line 839, in if name == "main": main() File "build_DB_FromGTF.py", line 202, in main extractInsertSeqs("exon", db_obj, genome_file, db_name) File "build_DB_FromGTF.py", line 500, in extractInsertSeqs scaff_seq = DNA(tempSeqObj.seq.tostring()) AttributeError: 'Seq' object has no attribute 'tostring'

I am using python v2.7.9 and JuncBASE v 1.2 beta

Could you please let me know what the problem is

Thanks, Sneha