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anbrooks / juncBASE

Junction Based Analysis of Splicing Events for RNA-Seq
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An error: ImportError: No module named rpy2.robjects #4

Open maofengbiao opened 7 years ago

maofengbiao commented 7 years ago

/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment. warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.') /nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/numpy/lib/function_base.py:586: VisibleDeprecationWarning: using a boolean instead of an integer will result in an error in the future tmp_a = tmp_a[keep] Not supporting deletions, yet e.g., 12M1D39M Not supporting insertions, yet e.g., 35M1I14M Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/plotEntropyScores.py", line 400, in if name == "main": main() File "/nfs/turbo/med-dou-lab/soft/juncBASE/plotEntropyScores.py", line 151, in main label="junction entropy") File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/pyplot.py", line 2965, in hist stacked=stacked, data=data, kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/init.py", line 1819, in inner return func(ax, *args, kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/axes/_axes.py", line 5985, in hist m, bins = np.histogram(x[i], bins, weights=w[i], hist_kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/numpy/lib/function_base.py", line 589, in histogram tmp_a_data = tmp_a.astype(float) ValueError: could not convert string to float: K /nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/numpy/lib/function_base.py:586: VisibleDeprecationWarning: using a boolean instead of an integer will result in an error in the future tmp_a = tmp_a[keep] Not supporting deletions, yet e.g., 39M1D11M Not supporting insertions, yet e.g., 27M1I4M Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/plotEntropyScores.py", line 400, in if name == "main": main() File "/nfs/turbo/med-dou-lab/soft/juncBASE/plotEntropyScores.py", line 151, in main label="junction entropy") File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/pyplot.py", line 2965, in hist stacked=stacked, data=data, *kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/init.py", line 1819, in inner return func(ax, args, kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/matplotlib/axes/_axes.py", line 5985, in hist m, bins = np.histogram(x[i], bins, weights=w[i], **hist_kwargs) File "/nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/numpy/lib/function_base.py", line 589, in histogram tmp_a_data = tmp_a.astype(float) ValueError: could not convert string to float: K /nfs/turbo/med-dou-lab/soft/anaconda2/lib/python2.7/site-packages/numpy/lib/function_base.py:586: VisibleDeprecationWarning: using a boolean instead of an integer will result in an error in the future tmp_a = tmp_a[keep] Not supporting deletions, yet e.g., 39M1D11M Not supporting insertions, yet e.g., 27M1I4M

maofengbiao commented 7 years ago

ValueError: could not convert string to float: K /?

maofengbiao commented 7 years ago

IndexError: list index out of range Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/pairwise_fishers_test_getASEvents_w_reference.py", line 19, in import rpy2.robjects as robjects ImportError: No module named rpy2.robjects Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/buildVirtualReference_median.py", line 16, in import rpy2.robjects as robjects ImportError: No module named rpy2.robjects Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/buildVirtualReference_median.py", line 16, in import rpy2.robjects as robjects ImportError: No module named rpy2.robjects Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/buildVirtualReference_median.py", line 16, in import rpy2.robjects as robjects ImportError: No module named rpy2.robjects Traceback (most recent call last): File "/nfs/turbo/med-dou-lab/soft/juncBASE/buildVirtualReference_median.py", line 16, in import rpy2.robjects as robjects ImportError: No module named rpy2.robjects