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anbrooks / juncBASE

Junction Based Analysis of Splicing Events for RNA-Seq
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pysqlite2.dbapi2.OperationalError: disk I/O error #5

Open wxzheng001 opened 7 years ago

wxzheng001 commented 7 years ago

When run the code python /home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py -g /home/wxzheng/bin/example/UCSC.hg19.knownGene_w_gene_symbol_EnsemblChr_noGL.gtf -d database --initialize ,an error occurs as follows: Traceback (most recent call last): File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 839, in if name == "main": main() File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 187, in main createAnnotTables(db_obj, db_name) File "/home/wxzheng/bin/juncBASE-1.2-beta/build_DB_FromGTF.py", line 354, in createAnnotTables check_same_thread = False) File "/home/wxzheng/bin/juncBASE-1.2-beta/pysqlite_wrap.py", line 90, in createTable cursor.execute( drop_statement ) pysqlite2.dbapi2.OperationalError: disk I/O error