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andersen-lab / Freyja

Depth-weighted De-Mixing
BSD 2-Clause "Simplified" License
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Custom summarised lineage demix option? #193

Closed AliceMichie93 closed 5 months ago

AliceMichie93 commented 7 months ago

Hi Josh and Dylan!

I'm aware that there is a function to present custom summarised lineage groups on plots and dashboards (which I love by the way, thank you!). I was wondering if there was an existing function, or one that can be introduced, where the raw abundance values of these custom groupings can be outputted for reporting purposes (perhaps by adding it as an option in the demix function)?

Thanks so much! Alice

joshuailevy commented 5 months ago

Hi Alice, Sorry we seemed to have missed this! I've just added an option to do this within plot, using the --writegrouped option. It'll be part of the next release. Josh

AliceMichie93 commented 5 months ago

Hi Josh, No worries at all, and thank you for including a solution in the next release! Thanks again! Alice