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andersen-lab / Freyja

Depth-weighted De-Mixing
BSD 2-Clause "Simplified" License
100 stars 29 forks source link

165 lineage file #204

Closed mariaelf97 closed 5 months ago

mariaelf97 commented 5 months ago

This pull request includes

  1. Removing defaults channel from conda configurations in README
  2. fixing a typo in README
  3. adding comments to functions
  4. fix demix, boot, plot and dash function to work with a custom lineage.yml file
  5. adding a new function called read_lineage_file() to read yml files
  6. fix the test function for collapse_barcode to accept one additional argument accordingly
  7. changing flag --hierarchy to --lineageyml for consistency
  8. Adding relevant explanation for --lineageyml flag to README