Genomic Surveillance: replace datafunk's sam_2_fasta with gofasta

andersen-lab / bjorn

GNU General Public License v3.0

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Genomic Surveillance: replace datafunk's sam_2_fasta with gofasta #1

Closed AlaaALatif closed 3 years ago

AlaaALatif commented 3 years ago

A new tool called gofasta has the same functionality as datafunk's sam_2_fasta but is much faster due to it being implemented in Go with multithreading. Follow up with @watronfire and initiate validation tests to ensure consistency.

mindoftea commented 3 years ago

This is now implemented in fork_prep