implemented mutations flag to automatically whitelist certain sequences, and separate others for manual inspection
added test run for A-Lab release using pre-defined test inputs and outputs (to be used for regression tests later)
added exception handling in mutations.py when none of the sequences contain a certain type of mutation (e.g. substitution, deletion, and/or insertion)
added consolidated README with general instruction on how to install and use bjorn to either generate genomic surveillence data...or to prepare sequencing analysis results for public release
mutations.py
when none of the sequences contain a certain type of mutation (e.g. substitution, deletion, and/or insertion)bjorn
to either generate genomic surveillence data...or to prepare sequencing analysis results for public release