andersen-lab / ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
https://andersen-lab.github.io/ivar/html/
GNU General Public License v3.0
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primer trimming issue with small insert sizes #132

Closed cmaceves closed 1 year ago

cmaceves commented 2 years ago

update the primer trimming code to trim the reverse primers in circumstances where to forward reads overlap with the reverse primer, because it creates problems when the insert size is small