Extended io for ivar trim

andersen-lab / ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

https://andersen-lab.github.io/ivar/html/

GNU General Public License v3.0

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Closed ashwinbabu888 closed 1 year ago

ashwinbabu888 commented 2 years ago

ivar trim now accepts sam/bam as input and allows io from stdout

gkarthik commented 1 year ago

This functionality has been added to trim_io branch.