The command line help for this param currently reads:
-c Minimum insertion frequency threshold(0 - 1) to call consensus.
and miminum_insertion_frequency is also the internal name used for the supplied value, but looking at the code it seems that this is actually treated like a minimum_indel_frequency, which also seems like the expected behavior for such an option?
So should the help message get adjusted and the internal variable be renamed?
The command line help for this param currently reads:
-c Minimum insertion frequency threshold(0 - 1) to call consensus.andmiminum_insertion_frequencyis also the internal name used for the supplied value, but looking at the code it seems that this is actually treated like aminimum_indel_frequency, which also seems like the expected behavior for such an option? So should the help message get adjusted and the internal variable be renamed?