Updating for the acceptance of stdin

andersen-lab / ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

https://andersen-lab.github.io/ivar/html/

GNU General Public License v3.0

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Updating for the acceptance of stdin #155

Closed cmaceves closed 1 year ago

cmaceves commented 1 year ago

Updates ivar trim and ivar consensus to allow stdin for streaming between operations, and adds an additional binary search to speed up primer trim code.