Fix for problem with combined use of stdin and -m parameter

andersen-lab / ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

https://andersen-lab.github.io/ivar/html/

GNU General Public License v3.0

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Fix for problem with combined use of stdin and -m parameter #158

Closed cmaceves closed 1 year ago

cmaceves commented 1 year ago

Addressing issue #157 and adding functionality to save aln objects on first iteration when using the initial reads in a file to calculate the default -m parameter, a bug introduced during release 1.4