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andersen-lab / ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
https://andersen-lab.github.io/ivar/html/
GNU General Public License v3.0
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ivar trim hangs when using -f parameter #159

Closed cmaceves closed 1 year ago

cmaceves commented 1 year ago

ivar trim hangs when using the -f parameter. updates introduced in version 1.4.1 changed the way reads are iterated, causing this line https://github.com/andersen-lab/ivar/blob/bd4be6ce431468c451938e9fa0d1578b9b902fdc/src/trim_primer_quality.cpp#L659 to be outdated.