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anderssonlab / PRIMEprep

Preprocessing and mapping of CAGE sequencing data
GNU General Public License v3.0
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Conda environment #5

Open anderssonrobin opened 3 weeks ago

anderssonrobin commented 3 weeks ago

Consider providing a conda environment yml file (environment.yml) so users can just create and install all necessary packages with conda env create -f environment.yml

anderssonrobin commented 2 weeks ago

Add Nicolas' conda environment.

Add instructions for installation:

  1. conda env create -f environment.yml
  2. conda activate PRIMEprep_ENV
  3. Download rRNAdust
  4. move rRNAdust to dirname $(which STAR)
  5. Create STAR index (in case you don't have created with the latest STAR 2.7.11b)