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andras-simonyi / citeproc-org

Renders Org-mode citations in CSL styles using citeproc-el.
GNU General Public License v3.0
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ox-hugo won't export org-mode file to markdown when using org-ref + citeproc-org because formatter definition is void #11

Closed lailamor closed 3 years ago

lailamor commented 3 years ago

Description

ox-hugo won't export org-mode file to markdown when using org-ref + citeproc-org because formatter definition is void.

Replication

  1. Create hugo blog.

    hugo new site blog

  2. Create main org file blog/blog.org. Add below to blog.org

    blog.org ``` #+AUTHOR: Me #+STARTUP: content #+HUGO_BASE_DIR: . #+HUGO_AUTO_SET_LASTMOD: t * Posts :post: :PROPERTIES: :EXPORT_HUGO_SECTION: posts :END: ** Issue :@issue: *** DONE ox-hugo won't export because formatter is void CLOSED: [2020-10-01 Mon 02:08] :PROPERTIES: :EXPORT_DATE: 2020-10-01 :EXPORT_FILE_NAME: issue :END: Lorem ipsum dolor sit amet, consectetuer adipiscing elit. Donec hendrerit tempor tellus. Donec pretium posuere tellus. Proin quam nisl, tincidunt et, mattis eget, convallis nec, purus. Cum sociis natoque penatibus et magnis dis parturient montes, nascetur ridiculus mus. Nulla posuere. Donec vitae dolor. Nullam tristique diam non turpis. Cras placerat accumsan nulla. Nullam rutrum. Nam vestibulum accumsan nisl. cite:dominik-2010-tom7rm * References bibliography:static/references.bib ```

  3. Create bibtex file in blog/static/references.bib. Add below do references.bib.

    references.bib ``` @book{dominik-2010-tom7rm, author = {Dominik, Carsten}, publisher = {Network Theory Ltd}, title = {{The Org Mode 7 Reference Manual}}, url = {https://web.archive.org/web/20160426062148/http://www.network-theory.co.uk/org/manual}, year = {2010} } ```

  4. Open blog.org and run export to hugo markdown compatible file (e.g. C-c C-e H A). See Emacs Messages buffer.

Error stack

Other comments

I didn't have this issue before. I've made some updates and also switched to using Emacs 28.0.50 feature/native-comp branch; no idea if it's related.

Debug information

Debug Info ## Emacs Version GNU Emacs 28.0.50 (feature/native-comp, build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.23, cairo version 1.17.3) of 2020-09-24 (commit e5b052d60d905209c6cefcf18c620167ed946301) ## Org Version Org mode version N/A (N/A !!check installation!! @ /home/lailamor/.emacs.d/straight/build/org/) ## citeproc-el version citeproc-el 0.1.2-2-g0ad1f97 0 0 ~/.emacs.d/straight/repos/citeproc-el/ ## citeproc-org version citeproc-org 0.2.4-25-g22a759c 0 0 ~/.emacs.d/straight/repos/citeproc-org/ ## org-ref version org-ref v1.1.1-431-g71f4eb7 0 0 ~/.emacs.d/straight/repos/org-ref/ ## Hugo Version Hugo Static Site Generator v0.75.1/extended linux/amd64 BuildDate: unknown ### Org `load-path` shadows **Warning**: Possible mixed installation of Org /home/lailamor/.emacs.d/straight/build/org/ox-beamer hides /usr/share/emacs/28.0.50/lisp/org/ox-beamer /home/lailamor/.emacs.d/straight/build/org/ox-icalendar hides /usr/share/emacs/28.0.50/lisp/org/ox-icalendar 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andras-simonyi commented 3 years ago

Thanks for the detailed report, will try to look into this in the next few days. I've transferred the issue to citeproc-org, because at first sight it looks most probably an org-related problem.

andras-simonyi commented 3 years ago

Unfortunately, I couldn't reproduce it so far, but it might be a problem with the -if-let macro on your system. Could you check what happens if the -if-let is omitted from the function definition, that is, could you redefine the function citeproc-formatter-for-format after encountering the problem by running

(defun citeproc-formatter-for-format (format) (alist-get format citeproc-fmt--formatters-alist))

(You can run it with M-: (eval expression) or from IELM, for instance.) Does this change anything?

lailamor commented 3 years ago

After redefining citeproc-formatter-for-format and running C-c C-e H A, I get:

[ox-hugo] 1/ Exporting ‘ox-hugo won't export because formatter is void’ ..
Symbol’s function definition is void: fmt-fun

I can't reproduce the issue on another machine of mine (Manjaro Linux) with emacs 28.0.50 master branch. Later I may try installing the feature/native-comp on that machine to test if I can reproduce.

I'm using a relatively simple init.el to test it.

init.el ``` ;;;; PACKAGES ;;; PACKAGE ARCHIVES ;; (require 'package) ;;; PACKAGE MANAGER: STRAIGHT.EL ;; https://github.com/raxod502/straight.el#getting-started ;; Date: 2020-07-18 (defvar bootstrap-version) (let ((bootstrap-file (expand-file-name "straight/repos/straight.el/bootstrap.el" user-emacs-directory)) (bootstrap-version 5)) (unless (file-exists-p bootstrap-file) (with-current-buffer (url-retrieve-synchronously "https://raw.githubusercontent.com/raxod502/straight.el/develop/install.el" 'silent 'inhibit-cookies) (goto-char (point-max)) (eval-print-last-sexp))) (load bootstrap-file nil 'nomessage)) ;; Make ':straight t' be assumed on use-package ;; unless you explicitly override it with :straight nil. ;; https://github.com/raxod502/straight.el#integration-with-use-package ;; https://github.com/raxod502/straight.el#integration-with-use-package-1 ;; Date: 2020-07-18 (setq straight-use-package-by-default t) ;;; USE-PACKAGE ;; Install use-package with the staight.el. ;; https://github.com/raxod502/straight.el#integration-with-use-package ;; Date: 2020-07-18 (straight-use-package 'use-package) ;;;; USER INTERFACE (UI) ;;; AUTO-FILL-MODE ;; Turn on Auto Fill mode automatically in Text mode and related modes. ;; Date: 2020-07-04 (add-hook 'text-mode-hook 'auto-fill-mode) ;;; LINE NUMBERS ;; Toggle Display-Line-Numbers mode in all buffers. ;; https://www.emacswiki.org/emacs/LineNumbers ;; Date: 2020-07-07 (when (version<= "26.0.50" emacs-version) (global-display-line-numbers-mode)) ;; Display relative line numbers. ;; https://www.reddit.com/r/emacs/comments/hjy4xj/relative_line_numbers/fwpa4in/ ;; Date: 2020-07-05 (setq-default display-line-numbers-type 'relative) ;;; COLUMN NUMBER ;; Display current column number. ;; https://www.gnu.org/software/emacs/manual/html_node/efaq/Displaying-the-current-line-or-column.html ;; Date: 2020-07-24 (setq column-number-mode t) ;;;; COMPUTER LANGUAGES ;;; ORG-MODE (use-package org) ;;; OX-HUGO ;; https://ox-hugo.scripter.co/doc/usage/ ;; Date: 2020-09-04 (use-package ox-hugo) ;;; ORG-REF ;; Date: 2020-09-07 (use-package org-ref) ;;; CITEPROC-ORG ;; Date: 2020-09-07 (use-package citeproc-org :config ;; Default value `"* Bibliography\n"' makes headings be exported by ox-hugo as ;; unordered lists to markdown. ;; https://github.com/andras-simonyi/citeproc-org/issues/10#issuecomment-693188387 ;; Date: 2020-09-16 (setq citeproc-org-org-bib-header "**** References\n")) (citeproc-org-setup) ```
lailamor commented 3 years ago

I may try installing the feature/native-comp on that machine to test if I can reproduce.

I did, but couldn't reproduce. Below the detailed backtraces.

citeproc-formatter-for-format: Symbol’s function definition is void: formatter ``` Debugger entered--Lisp error: (void-function formatter) formatter(#s(citeproc-formatter :rt #f(compiled-function (rt) #) :cite identity :bib-item # :bib #)) citeproc-formatter-for-format(org) citeproc-citation--render-formatted-citation(#s(citeproc-citation :cites ((... ... ...)) :note-index nil :capitalize-first nil :suppress-affixes nil :grouped nil) #s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) org nil) #f(compiled-function (it) #)(#s(citeproc-citation :cites (((position . first) (itd . #s(citeproc-itemdata :varvals ((citation-number . "1") (label . "page") (issued ...) (URL . "https://web.archive.org/web/20160426062148/http://...") (title . "The Org Mode 7 Reference Manual") (publisher . "Network Theory Ltd") (author ...) (citation-label . "dominik-2010-tom7rm") (type . "book")) :rawcite nil :rc-uptodate nil :sort-key ("Dominik, Carsten" "70100000" "The Org Mode 7 Reference Manual") :occurred-before t :disamb-pos first)) (id . "dominik-2010-tom7rm"))) :note-index nil :capitalize-first nil :suppress-affixes nil :grouped nil)) citeproc-render-citations(#s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) org nil) citeproc-org--append-and-render-citations(((:elt (link ...) :elt-no 0 :cite-no 0 :fn-no nil :new-fn nil)) #s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) hugo link nil) citeproc-org-render-references(hugo) org-export-as(hugo :subtreep nil nil (:output-file "/home/lailamor/hugo/blog2/content/posts/issue.md")) org-export-to-file(hugo "/home/lailamor/hugo/blog2/content/posts/issue.md" nil :subtreep nil) org-hugo-export-to-md(nil :subtreep nil) org-hugo--export-subtree-to-md(nil nil :all-subtrees) #f(compiled-function () #)() org-scan-tags(#f(compiled-function () #) (lambda (todo tags-list level) (progn (setq org-cached-props nil) (or (and (org-string<> (or (org-cached-entry-get nil "EXPORT_FILE_NAME") "") ""))))) nil nil) org-map-entries(#f(compiled-function () #) "EXPORT_FILE_NAME<>\"\"") org-hugo-export-wim-to-md(:all-subtrees nil nil) (lambda (a _s v _b) (org-hugo-export-wim-to-md :all-subtrees a v))(nil nil nil nil) org-export-dispatch(nil) funcall-interactively(org-export-dispatch nil) command-execute(org-export-dispatch) ```
Symbol’s function definition is void: fmt-fun ``` Debugger entered--Lisp error: (void-function fmt-fun) fmt-fun(nil) #f(compiled-function (rt) #)((((rendered-var . author) (rendered-names) (name-id . 0)) "Dominik")) mapconcat(#f(compiled-function (rt) #) ((((rendered-var . author) (rendered-names) (name-id . 0)) "Dominik") " " (((rendered-var . issued)) "2010")) "") #f(compiled-function (rt) #)((((cited-item-no . "1")) (((rendered-var . author) (rendered-names) (name-id . 0)) "Dominik") " " (((rendered-var . issued)) "2010"))) mapconcat(#f(compiled-function (rt) #) ("(" (((cited-item-no . "1")) (((rendered-var . author) (rendered-names) (name-id . 0)) "Dominik") " " (((rendered-var . issued)) "2010")) ")") "") #f(compiled-function (rt) #)((nil "(" (((cited-item-no . "1")) (((rendered-var . author) (rendered-names) (name-id . 0)) "Dominik") " " (((rendered-var . issued)) "2010")) ")")) citeproc-citation--render-formatted-citation(#s(citeproc-citation :cites ((... ... ...)) :note-index nil :capitalize-first nil :suppress-affixes nil :grouped nil) #s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) org nil) #f(compiled-function (it) #)(#s(citeproc-citation :cites (((position . first) (itd . #s(citeproc-itemdata :varvals ((citation-number . "1") (label . "page") (issued ...) (URL . "https://web.archive.org/web/20160426062148/http://...") (title . "The Org Mode 7 Reference Manual") (publisher . "Network Theory Ltd") (author ...) (citation-label . "dominik-2010-tom7rm") (type . "book")) :rawcite nil :rc-uptodate nil :sort-key ("Dominik, Carsten" "70100000" "The Org Mode 7 Reference Manual") :occurred-before t :disamb-pos first)) (id . "dominik-2010-tom7rm"))) :note-index nil :capitalize-first nil :suppress-affixes nil :grouped nil)) citeproc-render-citations(#s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) org nil) citeproc-org--append-and-render-citations(((:elt (link ...) :elt-no 0 :cite-no 0 :fn-no nil :new-fn nil)) #s(citeproc-proc :style #s(citeproc-style :info (... ... ... ... ... ... ... ... ... ... ... ... ...) :opts (... ... ... ... ...) :bib-opts (... ... ... ... ... ...) :bib-sort (lambda ... ...) :bib-sort-orders (t t t) :bib-layout (lambda ... ...) :cite-opts (... ... ... ... ... ... ... ... ... ...) :cite-note nil :cite-sort nil :cite-sort-orders nil :cite-layout (lambda ... ...) :cite-layout-attrs (... ... ...) :locale-opts (... ...) :macros (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :terms (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :uses-ys-var nil :date-text (... ... ... ...) :date-numeric (... ... ... ...)) :getter #f(compiled-function (itemids) #) :itemdata # :citations #s(queue :head (...) :tail (...)) :names # :finalized t) hugo link nil) citeproc-org-render-references(hugo) org-export-as(hugo :subtreep nil nil (:output-file "/home/lailamor/hugo/blog2/content/posts/issue.md")) org-export-to-file(hugo "/home/lailamor/hugo/blog2/content/posts/issue.md" nil :subtreep nil) org-hugo-export-to-md(nil :subtreep nil) org-hugo--export-subtree-to-md(nil nil :all-subtrees) #f(compiled-function () #)() org-scan-tags(#f(compiled-function () #) (lambda (todo tags-list level) (progn (setq org-cached-props nil) (or (and (org-string<> (or (org-cached-entry-get nil "EXPORT_FILE_NAME") "") ""))))) nil nil) org-map-entries(#f(compiled-function () #) "EXPORT_FILE_NAME<>\"\"") org-hugo-export-wim-to-md(:all-subtrees nil nil) (lambda (a _s v _b) (org-hugo-export-wim-to-md :all-subtrees a v))(nil nil nil nil) org-export-dispatch(nil) funcall-interactively(org-export-dispatch nil) command-execute(org-export-dispatch) ```
andras-simonyi commented 3 years ago

Thanks, and apologies for responding that late. Unfortunately the only thing I can think of is that the problems come somehow from macro-expansion failures related to native compilation -- for instance, it seems that the -if-let macro (from the dash package) used in the function citeproc-formatter-for-format is not expanded properly and Emacs tries to evaluate the binding form 

(formatter (alist-get format citeproc-fmt--formatters-alist))

as a function call. The second trace seems to show a similar problem with expanding the -when-let macro. If you want to experiment further you can try to replace all occurrences of -when-let and -if-let with the equivalent if-let and when-let macros and see whether this changes things (the code uses the dash variants only for historical reasons), but the problem seems to be very general, not specific to citeproc-el or citeproc-org.

andras-simonyi commented 3 years ago

Meanwhile I managed to reproduce the issue with the native-comp branch, and it seems to be solved by using the internal Emacs versions of the if-let and when-let macros. I've pushed the changes (https://github.com/andras-simonyi/citeproc-el/commit/f6268ab07de45ba6a324f8cbb6b6fec99ba6472b) to the citeproc-el repo -- could you check whether it fixes the problem on your system?

lailamor commented 3 years ago

could you check whether it fixes the problem on your system?

Just made some tests, and it fixed the problem.

but the problem seems to be very general, not specific to citeproc-el or citeproc-org.

Yes, seems like an upstream issue indeed by your explanation. I'd report there but I'm not familiar with mailing lists at all...

Thank you so much András!