andreariba / DeepCycle

Cell cycle inference in single-cell RNA-seq
https://www.nature.com/articles/s41467-022-30545-8
GNU General Public License v3.0
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DeepCycle.py assumes umap already run on Anndata object #20

Closed adam-cornwell closed 1 month ago

adam-cornwell commented 9 months ago

I pre-processed anndata objects as the existing documentation suggested, but then found the script errored when trying to access UMAP embeddings that didn't exist yet. It would be great to add a note about running UMAP on the anndata object first to the docs. Thanks!