search

andreas-wilm / lofreq3

LoFreq Version 3
MIT License
27 stars 0 forks source link

Build issues, nim reports a type mismatch #13

Closed jonaudet closed 4 years ago

jonaudet commented 4 years ago

Hi, I am trying to install LoFreq3 on Ubuntu 18.04 (on the Windows Subsystem for Linux). Nim installed properly but is reporting the errors below when building LoFreq3. (this is the end of a long list of "hints", but seems like the most useful part...)

... /home/user/lofreq3/src/lofreqpkg/pileup/storage/slidingDeque.nim(111, 6) Hint: '[]' is declared but not used [XDeclaredButNotUsed] ... Hint: recordFilter [Processing] ... Hint: algorithm [Processing] ... Hint: iSequence [Processing] ... Hint: processor [Processing] ... /home/user/lofreq3/src/lofreqpkg/pileup/algorithm.nim(140, 16) Error: type mismatch: got <Processor[slidingDeque.SlidingDeque], int64> ... but expected one of: ... proc beginRead(self: Processor; start: int): void ... first type mismatch at position: 2 ... required type for start: int ... but expression 'start(read)' is of type: int64 ... expression: beginRead(processor, start(read))

andreas-wilm commented 4 years ago

Sorry, I fixed this on the viterbi branch, which I haven't merged into master yet. You can see it's not prime time yet for this version...I'll get this stable as soon as I can. In the meantime, please give the viterbi branch a go

jonaudet commented 4 years ago

That worked, thanks.