Mincov and maxcov filter (coverage() function) in the presence of indels - Githubissues

andreas-wilm / lofreq3

LoFreq Version 3

MIT License

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Mincov and maxcov filter (coverage() function) in the presence of indels #28

Open andreas-wilm opened 3 years ago

andreas-wilm commented 3 years ago

tests/call_samples:

lofreq call -f cov.fa -b cov.bam --mincov 4 should return 0
lofreq call -f cov.fa -b cov.bam --maxcov 1 should return 2

andreas-wilm commented 3 years ago

Addressed in 8b7ff89aafdbd2917c9a81f0701d3c48b30aaa52