Save full time series of estimated R_t or R_prime_t in sim_and_fit_realisations()

andrew-edwards / EDMsimulate

An R package for simulating fish populations for empirical dynamic modeling

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Save full time series of estimated R_t or R_prime_t in sim_and_fit_realisations() #14

Closed andrew-edwards closed 1 year ago

andrew-edwards commented 1 year ago

Should make a list object, for each m there will be edm values, Larkin values, and Ricker values

[x] Andy to do for EDM
[x] Also save all_sims output to compare with predictions
[x] Carrie to do for Larkin and Ricker, after tweaking some other code (I think).

andrew-edwards commented 1 year ago

Ignore above commit - I meant to reference #12.

andrew-edwards commented 1 year ago

@carrieholt - see the above commit and the one before for what I did. See the two TODO's for how you can add in your Larkin and Ricker full time series.

andrew-edwards commented 1 year ago

All done, just needs a bit of tweaking regarding larkin_fit = FALSE, but debugging that now.