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andrew-edwards / EDMsimulate

An R package for simulating fish populations for empirical dynamic modeling
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random error for recruitment deviations in salmon_sim.R and sim_and_fit_realisations.R #9

Closed carrieholt closed 1 year ago

carrieholt commented 1 year ago

epilson_tg gives the random deviations for the age proportions so that we can keep track of the random numbers being used in in each simulation. https://github.com/andrew-edwards/EDMsimulate/blob/a39d26a7108898a2aba5adb3ee23c2414ee4fa14/R/sim_and_fit_realisations.R#L82

However, salmon_sim also needs a series of random numbers for the recruitment deviations (nu_t) and I don't see where these are generated in the sim_and_fit_realisations.R. Instead I think they are generated randomly within salmon_sim.R (which is the default): https://github.com/andrew-edwards/EDMsimulate/blob/a39d26a7108898a2aba5adb3ee23c2414ee4fa14/R/salmon_sim.R#L213

andrew-edwards commented 1 year ago

Done in fdaef7b