andrew-zentner / abmcmc

Assembly Bias Fitting Paper
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Comments from Frank #25

Closed vdbosch69 closed 8 years ago

vdbosch69 commented 8 years ago

Section 2.1.2. I think we need to point out to the reader that our model is subtly different from that of Zehavi et al. (in terms of us not multiplying with ). We can simply mention why we do not include that term, and point out that this does not in any way cause a significant change of the results. In my opinion we CANNOT say that we mimic the standard HOD of Zehavi et al. without mentioning this difference.

Section 2.1.4. I think we should give a bit more detail as to the computation of w_p, beyond `as described in detail in http://halotools.readthedocs.io'. I am a strong oponent of papers having to be self-containing as much as possible. I suggest we say a few words about how we construct the randoms.

For the same reason, I think the paper should also be a bit more explicit regarding the Decorated HOD model. I have included now, in section 2.2, an equation that makes it explicit how Acen and Asat modify the HOD (this is only valid for f_split =0.5, as I indicate). PLEASE CHECK TO MAKE SURE THAT THIS EQUATION IS CORRECT.

I have added a summation sign to the first term in Eq. 4. If you don't like it, than please point out that we use Einstein summation convention....

In Section 3.1, first paragraph, you write that the 50 randomly selected models in Figs 2-4 are selected from the MCMC chains within Delta Chi2 < 1. However, in the caption of Fig 2 you write that you use Delta Chi2 < 5.89....This needs to be corrected. Also, when quoting such specific numbers, make sure that they are consistent with a statement in captions of Figs 3 and 4 that state `same as fig 2....'

Caption of Table 3.2 and Section 3.2, third paragraph. I do NOT understand what you mean by ..`where the posterior on a parameter is monotonic within the physical parameter space'....Could you please rephrase this...

Finally, I have corrected a few typos in the text.

andrew-zentner commented 8 years ago

Frank, did you commit this yet? I don't see it.

Also, I have addressed many of these already. I will comment and close this issue asap.

vdbosch69 commented 8 years ago

I have trouble committing Github is not doing what I think it should be doing. HELP IS NEEDED

Prof. Frank C. van den Bosch e-mail: frank.vandenbosch@yale.edu Astronomy Department, Yale University phone: +1-203-432-0196 P.O. Box 208101 fax: +1-203-432-5048

New Haven, CT 06520-8101 http://www.astro.yale http://www.astro.yale/.edu/vdbosch

On Jun 16, 2016, at 2:44 PM, Andrew Zentner notifications@github.com wrote:

Frank, did you commit this yet? I don't see it.

Also, I have addressed many of these already. I will comment and close this issue asap.

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aphearin commented 8 years ago

@vdbosch69 - I think the version of master that @andrew-zentner committed in https://github.com/andrew-zentner/abmcmc/commit/6f630de82aaa763b8c1706656cd756ee9b1f2897 addresses your first point, doesn't it? Are you sure you were looking at an up-to-date version of master?

As for your second comment: I disagree and I do not think it is necessary to describe how RR is computed. There are lots of details we are leaving out, for example what is our numerical method for evaluating the erf function. The only truly "self-contained" paper would be infinite in length. What gets included is a subjective judgement call. This particular detail strikes me as totally overkill. The only reader who would be interested in this fine-grained detail would be a reader who is trying to exactly reproduce our results. Such a reader would need to read the code anyway, so including it here seems redundant and not worth the space.

I have the exact same opinion about your comment about A_cen and A_sat. Anyone who cares about this implementation detail will need to read Hearin+16 anyway, so what is the point?

andrew-zentner commented 8 years ago

As far as wp(rp), I actually use CorrFunc, so I rewrote that entire section.

vdbosch69 commented 8 years ago

When I started editting the file was up to date. When I tried to committ it was behind. Now it won;t let me commit. Will send the tex file to AZ.

As for AH comments; I strongly disagree. I just added one equation that shows how Acen and Asat enter. There are MANY people interested in this stufff who have NOT read Hearin+16, and if we can expain to them what the model does without them having to read it, it is worth 1-2 sentences. As for the RR I don't have strong feelings, but I think mentioning in a few words how the randoms were selected is not redundant at all. It is NOT the same as explaining how erf is computed.

aphearin commented 8 years ago

Ok @vdbosch69. I think we just disagree, but I also don't think this is worth arguing about, so if you already took the time to implement the change then I'm certainly fine with having this appear in the draft.

andrew-zentner commented 8 years ago

I think this statement is all that is needed for the wp calculation. I am certainly not going to summarize CorrFunc. Note that the information that was previously there was not correct. CorrFunc counts pairs and uses the analytic expression for random probabilities, which is entirely appropriate for a simulation analysis.

Having populated mocks, we perform the computation of the projected two-point galaxy correlation function, $w{\rm p}(r{\rm p})$ using the publicly-available {\tt CorrFunc} package \citep{corrfunc} which has been extensively optimized for computational speed.

vdbosch69 commented 8 years ago

I created a pull request. Could you please check to see whether you can merge this. Am still experiencing all sorts of shit here with git, so I just want to be sure you got the changes I made…

F

Prof. Frank C. van den Bosch e-mail: frank.vandenbosch@yale.edu Astronomy Department, Yale University phone: +1-203-432-0196 P.O. Box 208101 fax: +1-203-432-5048

New Haven, CT 06520-8101 http://www.astro.yale http://www.astro.yale/.edu/vdbosch

On Jun 17, 2016, at 9:44 AM, Andrew Zentner notifications@github.com wrote:

I think this statement is all that is needed for the wp calculation. I am certainly not going to summarize CorrFunc. Note that the information that was previously there was not correct. CorrFunc counts pairs and uses the analytic expression for random probabilities, which is entirely appropriate for a simulation analysis.

Having populated mocks, we perform the computation of the projected two-point galaxy correlation function, $w{\rm p}(r{\rm p})$ using the publicly-available {\tt CorrFunc} package \citep{corrfunc} which has been extensively optimized for computational speed.

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andrew-zentner commented 8 years ago

All fixed.