andrewhill157 leiden issues

andrewhill157 / leiden

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Bump wheel from 0.23.0 to 0.38.1

#47 dependabot[bot] opened 1 year ago
0
Gene list fetching for LOVD3 databases now fetches all genes and not just the first page.

#46 falquaddoomi opened 7 years ago
0
_LOVD3GeneData occasionally fails when attempting to extract text from a field that begins with HTML

#45 falquaddoomi opened 7 years ago
0
_LOVD3Database doesn't acquire full list of genes

#44 falquaddoomi opened 7 years ago
0
Update validation script command line interface

#43 andrewhill157 opened 10 years ago
0
Splice/Intron/UTR Variant Validation

#42 andrewhill157 opened 10 years ago
0
Look into changing to VEP Remapping

#41 andrewhill157 closed 10 years ago
2
Loosen Broad Cluster Dependencies

#40 andrewhill157 closed 10 years ago
1
Loosen Broad Cluster Dependencies

#39 andrewhill157 closed 10 years ago
0
Test Issue

#38 andrewhill157 closed 10 years ago
0
Write code to generate pseudo-VCF output files

#37 andrewhill157 closed 10 years ago
0
Look into REST API service for LOVD

#36 andrewhill157 closed 10 years ago
0
Split remapped entries into CHROM #, COORDINATE, REF, ALT in output file

#35 andrewhill157 closed 10 years ago
1
Some LOVD3 genes list multiple reference transcripts

#34 andrewhill157 closed 10 years ago
2
Handle empty entries on database more gracefully

#33 andrewhill157 closed 10 years ago
2
Integrate Mutalyzer WebServices to automate remapping

#32 andrewhill157 closed 10 years ago
10
Ensure header label extraction is robust.

#31 andrewhill157 closed 10 years ago
0
Ensure data sent to Monkol has consistent header ordering

#30 andrewhill157 closed 10 years ago
2
Add Full LOVD3 Support

#29 andrewhill157 closed 10 years ago
2
Introduce better error handling for link extraction

#28 andrewhill157 closed 10 years ago
0
Fix bug: genes with over 1000 entries are cut off at 1000 with current script

#27 andrewhill157 closed 10 years ago
2
Discuss DMD variants with monkol

#26 andrewhill157 closed 10 years ago
0
Clean up file delimiter and file naming inconsistencies.

#25 andrewhill157 closed 10 years ago
0
Look into extracting data from entire Leiden Database

#24 andrewhill157 closed 10 years ago
4
Modify initial filetering of extracted Leiden Data

#23 andrewhill157 closed 10 years ago
1
Discuss validation more closely with Monkol.

#22 andrewhill157 closed 10 years ago
0
Discuss Indels with Monkol

#21 andrewhill157 closed 10 years ago
0
Add unit tests

#20 andrewhill157 closed 10 years ago
2
Start using pycharms IDE

#19 andrewhill157 closed 10 years ago
0
Migrate code to Python 3.3

#18 andrewhill157 closed 10 years ago
0
Update documentation

#17 andrewhill157 closed 10 years ago
1
Update all command line arguments to argsparse.

#16 andrewhill157 closed 10 years ago
2
Look into better command line interfaces

#15 andrewhill157 closed 10 years ago
1
Examine failures in variant extraction, remapping, and combination with original data.

#14 andrewhill157 closed 10 years ago
0
Fix line break error in data extraction script

#13 andrewhill157 closed 10 years ago
0
Make function that can automatically rename mutalyzer downloads

#12 andrewhill157 closed 10 years ago
2
Make command line scripts have process all and process lists of specific inputs functionality.

#11 andrewhill157 closed 10 years ago
0
Investigate how hard it would be to port open refine recipe to python.

#10 andrewhill157 closed 10 years ago
0
Make a script to combine mutalyzer output and original input files.

#9 andrewhill157 closed 10 years ago
0
Process additional genes from Leiden and send to Monkol.

#8 andrewhill157 closed 10 years ago
1
Examine flags in processed annotation data to determine causes.

#7 andrewhill157 closed 10 years ago
1
Add script to flag mutations in Monkol's annotation data.

#6 andrewhill157 closed 11 years ago
1
Fix body position when header changes for smaller screen sizes.

#5 andrewhill157 closed 11 years ago
1
Need to validate mappings from mutalyzer output.

#4 andrewhill157 closed 11 years ago
1
Need to finish proper notation of non-SNP variants to a VCF like format.

#3 andrewhill157 closed 10 years ago
1
Finalize which columns of data to include in open refine output and their format.

#2 andrewhill157 closed 10 years ago
1
Add refseq id automatic extraction.

#1 andrewhill157 closed 10 years ago
0