Closed Karhide closed 6 years ago
Thanks for testing it out. I'll have to add some documentation!
By default every X number of reads it will print out the current predicted MLST profile. You can set it to just print everything out at the end after processing all reads. The idea is that you can stop it running when a consistent result pops out (e.g. if you are running it in real time while sequencing on a minION). The star indicates a partial match.
Andrew
On 15 February 2018 at 15:02, Karhide notifications@github.com wrote:
Hi there!
I gave your tool a spin recently (latest version) and just had a few questions, possibly leading to updated documentation.
- What do the asterisks mean, e.g. gmk(319)* ?
- Why do I see multiple of the same MLST profiles identified? E.g.: Novel tpi(216) gmk(319) yqiL(182) arcC(46) glpF(223) aroE(484) pta(131) Novel tpi(216) gmk(319) yqiL(182) arcC(46) glpF(223) aroE(484) pta(131)
I have a feeling these might be dumb questions, so thanks in advance!
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Thanks for the clarification, everything makes sense now, as expected I was being a numpty!
Hi there!
I gave your tool a spin recently (latest version) and just had a few questions, possibly leading to updated documentation.
Novel tpi(216) gmk(319) yqiL(182) arcC(46) glpF(223) aroE(484) pta(131)
Novel tpi(216) gmk(319) yqiL(182) arcC(46) glpF(223) aroE(484) pta(131)
I have a feeling these might be dumb questions, so thanks in advance!