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andrewrech / antigen.garnish

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Process Killed #135

Closed itamuria closed 4 years ago

itamuria commented 4 years ago

Hello,

I am working with the docker in a MacBook with 16 Gigabytes of RAM. I follow all the instructions and everything looks to working well but after "Predicting affinities" the process is killed and R is crashing.

Why could it happen?

Read 100 items
Running mhcflurry in parallel. 
Input file 1 of 3
Input file 2 of 3
Forcing tensorflow backed
Forcing tensorflow backed
Read input CSV with 270 rows, columns are: allele, pepetide
Read input CSV with 270 rows, columns are: allele, pepetide
Predicting processing
Predicting processing
Predicting affinities
Predicting affinities
Killed 
root@a46c6a45:/#
leeprichman commented 4 years ago

Docker will set a maximum container memory allotment that may be less than your maximum 16GB. I would first check the settings on the docker desktop app and increase them substantially before trying again. Let me know if that works or not.

itamuria commented 4 years ago

It worked! thanks Lee!