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andrewrech / antigen.garnish

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no score calculated #154

Closed dxl3742 closed 1 year ago

dxl3742 commented 1 year ago

Hey Andrew, When I loaded the package, it reported "Skipping BLAST because ncbiblast+ is not in PATH", I downloaded blast, now it runs but doesn't give me any scores.

v %>% foreignness_score(db = "human") %>% print Generating FASTA to query. Running blastp for homology to IEDB antigens. Removing temporary fasta files. nmer 1: SIINFEKL 2: ILAKFLHWL 3: GILGFVFTL v %>% dissimilarity_score(db = "human") %>% print Running blastp for homology to self antigens. Removing temporary fasta files. nmer 1: SIINFEKL 2: ILAKFLHWL 3: GILGFVFTL

It would be great if you could help, thanks in advance!

dxl3742 commented 1 year ago

Hi, I deleted the previous installation and reinstalled the package, now I am still getting the "Skipping BLAST because ncbiblast+ is not in PATH" error.

dxl3742 commented 1 year ago

https://github.com/andrewrech/antigen.garnish/issues/138 Didn't set the AG_DATA_DIR and path for blast (why is this not mentioned in the installation guide?) closing now.

guanghua13 commented 8 months ago

Hi, When I loaded the package, it was also reported "Skipping BLAST because ncbiblast+ is not in PATH".May I ask what's going on?