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andrewrech / antigen.garnish

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Illegal argument in garnish_variants #157

Closed saharlccSCSU closed 1 month ago

saharlccSCSU commented 9 months ago

Hi, We are trying to run antigen garnish on a GATK generated vcf. We get the error below when calling garnish_variants(file). Any insights?

All variants processed Error in stri_replace_all_regex(string, pattern, fix_replacement(replacement), : Illegal argument. (U_ILLEGAL_ARGUMENT_ERROR) Calls: garnish_variants ... -> -> stri_replace_all_regex Execution halted

Thank you, Sahar