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andrewrech / antigen.garnish

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Question about interpreting results #35

Closed mrForce closed 7 years ago

mrForce commented 7 years ago

When run the "Predict neoepitopes" example, I get this:

Meta line 56 read in. All meta lines processed. Character matrix gt created. Character matrix gt rows: 3 Character matrix gt cols: 11 skip: 0 nrows: 3 row_num: 0

Processed variant: 3 All variants processed sample_id priority_neos classic_neos classic_top_score alt_neos 1: normal_tumor.bam 0 0 0.01066477 5 alt_top_score mhc_binders variants transcripts predictions nmers 1: 35.80603 13 3 3 276 276

I've seen the documentation for garnish_summary, but I'm still not sure how to interpret these results.

andrewrech commented 7 years ago

Hi @mrForce,

Thanks for your comment and trying out the package. I added some information to the documentation for this function. Let me know if that is helpful, and what other information you would like.

Andrew

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