It is straightforward to filter all predicted neoepitopes against the human entire peptidome. Perhaps this is only required for 8mers or 9mers, probabilistically. It seems that stringi is the right combination of fast and reliable.
The search can stop after any match and we don't care about a return value.
andrewrech
commented
7 years ago
It is straightforward to filter all predicted neoepitopes against the human entire peptidome. Perhaps this is only required for 8mers or 9mers, probabilistically. It seems that
stringiis the right combination of fast and reliable.The search can stop after any match and we don't care about a return value.