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andreyshabalin / MatrixEQTL

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
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Why are the FDR and P-value values the same for many SNP loci? #27

Open chenchen-eng opened 11 months ago

chenchen-eng commented 11 months ago

hello,teacher,my result that have a lot SNP loci which the FDR and P-value values are same,i think what one reason is that the genotyping results for some SNPs are consistent，while some SNPs with inconsistent genotyping results also have the same FDR and P-value values.thanks

andreyshabalin commented 6 months ago

It's a natural result of the Benjamini and Hochberg FDR algorithm used in Matrix eQTL.