andrjohns / StanEstimators

Estimate Parameters for Arbitrary R Functions using 'Stan'
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Segfault when loading rstan package #20

Closed quantifish closed 4 months ago

quantifish commented 4 months ago

Hi! Thanks for the amazing package - this is super helpful and much appreciated!

I am getting a segfault when attempting to load the rstan package after the StanEstimators package, see below for the error and some system info. Let me know if I can supply any other info. I tried this from a fresh install of R from the command line (to rule out any RStudio/editor issues). Not sure what to try out next....

R version 4.3.2 (2023-10-31) -- "Eye Holes"
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> Sys.info()
                                                           sysname 
                                                           "Linux" 
                                                           release 
                                          "6.9.3-76060903-generic" 
                                                           version 
"#202405300957~1718348209~22.04~7817b67 SMP PREEMPT_DYNAMIC Mon J" 
                                                          nodename 
                                                          "pop-os" 
                                                           machine 
                                                          "x86_64"
> packageVersion("rstan")
[1] ‘2.32.6’
> packageVersion("StanEstimators")
[1] ‘0.1.2.9000’
> library(StanEstimators)
> library(rstan)
Loading required package: StanHeaders

 *** caught segfault ***
address 0x22ca39, cause 'memory not mapped'

Traceback:
 1: dyn.load(file, DLLpath = DLLpath, ...)
 2: library.dynam(lib, package, package.lib)
 3: loadNamespace(package, lib.loc)
 4: doTryCatch(return(expr), name, parentenv, handler)
 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 6: tryCatchList(expr, classes, parentenv, handlers)
 7: tryCatch({    attr(package, "LibPath") <- which.lib.loc    ns <- loadNamespace(package, lib.loc)    env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) {    P <- if (!is.null(cc <- conditionCall(e)))         paste(" in", deparse(cc)[1L])    else ""    msg <- gettextf("package or namespace load failed for %s%s:\n %s",         sQuote(package), P, conditionMessage(e))    if (logical.return && !quietly)         message(paste("Error:", msg), domain = NA)    else stop(msg, call. = FALSE, domain = NA)})
 8: library(rstan)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 
andrjohns commented 4 months ago

Thanks for letting me know, should be fixed now!