transcript/gene quantification

[droeatumn]

I have quantification per transcript, not gene as is the format for the input. Do you have advice how how I should handle this? Should I re-quantify at the gene level or find a tool that will aggregate the transcripts?

[andymckenzie]

Hello, yes, you will need a way to quantify expression at the gene level in order to run the functions in this package. I think that either method should work and likely yield similar results

[droeatumn]

Thanks