search

andyrimmer / Platypus

Platypus Variant Caller
GNU General Public License v3.0
105 stars 38 forks source link

Is there any way to set ploidy? #45

Closed noporpoise closed 8 years ago

noporpoise commented 8 years ago

Is it possible to specify if the samples are haploid or diploid? Or is Platypus only suitable for variant calling in diploid samples?

dancooke commented 8 years ago

No, Platypus has a fixed diploid model. You can of course give Platypus non-diploid samples and post-filter the calls, this should work pretty well for haploid data.

On 14 Dec 2015, at 23:25, Isaac Turner notifications@github.com<mailto:notifications@github.com> wrote:

Is it possible to specify if the samples are haploid or diploid? Or is Platypus only suitable for variant calling in diploid samples?

— Reply to this email directly or view it on GitHubhttps://github.com/andyrimmer/Platypus/issues/45.