Open ghost opened 8 years ago
Hi, I'm using Platypus to discover indels, in particular long deletions. Testing it I found the long deletion I'm looking for in the error messages but not in the result file.
The errors, showing the long deletion, are the following:
ERROR - cpos = 111259961 end pos = 111259959. Variants are (DEL(chr9:111258473-111259959 -TGTC...TATT nReads = 0, Source= 4),) ERROR - cpos = 111259961 end pos = 111259959. Variants are (SNP(chr9:111258459-111258459 -G +C nReads = 0, Source= 4), DEL(chr9:111258473-111259959 -TGTC...TATT nReads = 0, Source= 4))
Does anyone have suggestions about it? (Why is the deletion displayed by errors and not results?)
Thank you in advance.
Hi, I'm using Platypus to discover indels, in particular long deletions. Testing it I found the long deletion I'm looking for in the error messages but not in the result file.
The errors, showing the long deletion, are the following:
ERROR - cpos = 111259961 end pos = 111259959. Variants are (DEL(chr9:111258473-111259959 -TGTC...TATT nReads = 0, Source= 4),) ERROR - cpos = 111259961 end pos = 111259959. Variants are (SNP(chr9:111258459-111258459 -G +C nReads = 0, Source= 4), DEL(chr9:111258473-111259959 -TGTC...TATT nReads = 0, Source= 4))
Does anyone have suggestions about it? (Why is the deletion displayed by errors and not results?)
Thank you in advance.