Cannot configure include and lib paths; defaults to system include and lib paths

andyrimmer / Platypus

Platypus Variant Caller

GNU General Public License v3.0

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Cannot configure include and lib paths; defaults to system include and lib paths #59

Open IvantheDugtrio opened 7 years ago

IvantheDugtrio commented 7 years ago

Setting the C_INCLUDE_PATH, LIBRARY_PATH, and LD_LIBRARY_PATH variables to the directory of my htslib project prior to compilation doesn't seem to change anything as compilation always terminates with "htslib/bgzf.h is missing".

Manually changing incDirs and libraryDirs in setup.py also didn't change anything, nor did changing the paths in htslibWrapper.pxd.