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andyrimmer / Platypus

Platypus Variant Caller
GNU General Public License v3.0
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HLA Genotyping #60

Open gavrilalucianionut opened 7 years ago

gavrilalucianionut commented 7 years ago

Dear Sirs,

I am trying to make HLA Genotyping for HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DRB2 and HLA-DQA1. Please tell me where can I find the HLA reference files in VCF format, as it is required for one of the input parameters.

Thank you.

gerton commented 7 years ago

Dear Lucian,

It’s currently not straightforward to use Platypus in HLA typing mode. We’re working on a dedicated pipeline for this, which we will make available in the next few months.

Best wishes Gerton

On 14 Jan 2017, at 23:15, gavrilalucianionut notifications@github.com wrote:

Dear Sirs,

I am trying to make HLA Genotyping for HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DRB2 and HLA-DQA1. Plese tell me where can I find the HLA reference files in VCF format, as it is required for the input parameter.

Thank you.

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