Calculating BAF from Platypus VCF

andyrimmer / Platypus

Platypus Variant Caller

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Open ilykos opened 5 years ago

ilykos commented 5 years ago

Hi,

Is there a sensible way of calculating bi-allelic frequency from Platypus VCF or genotype output for an SNV?

I can see the TN/TR/NV/NR and similar fields, but I am not sure if it is possible to use them.

Thanks,