We use Platypus tool for ages now and installing Python 2 in new linux server became difficult. I really appreciate the run time of platypus on germline variant calling for whole genome and whole exome data.
The changes made in the tool helped me in implementing the same tool in python 3 (I am using Python 3.6.6) and the tools runs perfectly fine.
I am not a programmer (just a bioinformatician) so if the code is not written upto your standards, edit it or let me know.
We use Platypus tool for ages now and installing Python 2 in new linux server became difficult. I really appreciate the run time of platypus on germline variant calling for whole genome and whole exome data.
The changes made in the tool helped me in implementing the same tool in python 3 (I am using Python 3.6.6) and the tools runs perfectly fine.
I am not a programmer (just a bioinformatician) so if the code is not written upto your standards, edit it or let me know.
Thanks and Regards, Mukund