search

anergictcell / hpo

Rust library for the Human Phenotype Ontology
6 stars 1 forks source link

Latest HPO cannot be loaded #64

Closed holtgrewe closed 4 months ago

holtgrewe commented 4 months ago

The version line changed in one of the recent releases:

data-version: hp/releases/2024-07-01/hp-base.owl
anergictcell commented 4 months ago

Can you tell me which version of hpo you're using and how you're loading the Ontology? It works fine for me.

wget https://github.com/obophenotype/human-phenotype-ontology/releases/latest/download/hp.obo
wget https://github.com/obophenotype/human-phenotype-ontology/releases/latest/download/genes_to_phenotype.txt
wget https://github.com/obophenotype/human-phenotype-ontology/releases/latest/download/phenotype.hpoa

cargo run -r --example compare_ontologies tests/ontology.hpo ./
#Numbers
Version          2024-04-26   2024-07-01
Terms            18961        19161
Genes            5075         5088
Omim Diseases    8251         8296
Orpha Diseases   4244         4244
....
holtgrewe commented 4 months ago

Never mind, I did not see that they still have the hpo.obo and used the hpo-base.obo. Thanks!