angelolab / Nimbus

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Added deepcell application wrapper for model #37

Closed JLrumberger closed 1 year ago

JLrumberger commented 1 year ago

What is the purpose of this PR?

Wraps the model with the deepcell Application class that does batching and tile & stitch during inference.

How did you implement your changes

Added the required functions cell_preprocess, cell_postprocess and format_output as well as class CellClassification that inherits from deepcell.Application.

Remaining issues

None