This PR closes #41 by adding a subclass SimpleTFRecords that inherits from SegmentationTFRecords. Instead of requiring a conversion_matrix, it requires a cell_table that contains column $marker+self.gt_suffix that contains 0s/1s/2s labels for each cell segment.
How did you implement your changes
I subclasses SegmentationTFRecords, implemented new functions for __init__, get_image and get_inst_binary_masks. In SegmentationTFRecords.load_and_check_input everything that is specific to conversion_matrix-based GT-generation is moved to check_additional_inputs.
What is the purpose of this PR?
This PR closes #41 by adding a subclass
SimpleTFRecordsthat inherits fromSegmentationTFRecords. Instead of requiring aconversion_matrix, it requires a cell_table that contains column $marker+self.gt_suffixthat contains 0s/1s/2s labels for each cell segment.How did you implement your changes
I subclasses
SegmentationTFRecords, implemented new functions for__init__,get_imageandget_inst_binary_masks. InSegmentationTFRecords.load_and_check_inputeverything that is specific toconversion_matrix-based GT-generation is moved tocheck_additional_inputs.Remaining issues
None