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Nimbus
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Clustering proof of concept
#32
JLrumberger
closed
1 year ago
1
Added exclude_background_tiles and fixed normalization
#31
JLrumberger
closed
1 year ago
0
Training log
#30
JLrumberger
opened
1 year ago
2
Figure outline for paper
#29
ngreenwald
closed
1 year ago
1
Added promix naive loss masking scheme
#28
JLrumberger
closed
1 year ago
0
Added manual training loop to capture training data within epochs
#27
JLrumberger
closed
1 year ago
1
Promix Naive
#26
JLrumberger
closed
1 year ago
3
Added segmentation_naming_convention function to segmentation_data_prep
#25
JLrumberger
closed
1 year ago
1
Implemented subset plots
#24
JLrumberger
closed
1 year ago
1
Subset evaluation data for plots
#23
JLrumberger
closed
1 year ago
0
Training tweaks and loss wrapper
#22
JLrumberger
closed
1 year ago
0
Training tweaks (grokking training scheme, selective loss function and label smoothing)
#21
JLrumberger
closed
1 year ago
1
Predict with model and calculate pixel-wise evaluation metrics
#20
JLrumberger
closed
1 year ago
3
Evaluate models / calculate scores for the pixel level
#19
JLrumberger
closed
1 year ago
0
Training script
#18
JLrumberger
closed
2 years ago
6
Put argparse CLI in plot_utils in a separate function and write tests for it
#17
JLrumberger
closed
1 year ago
1
Plot utils
#16
JLrumberger
closed
2 years ago
0
Plot utils
#15
JLrumberger
closed
2 years ago
1
Prepare example
#14
JLrumberger
closed
2 years ago
1
Implemented make_example and make_tf_record
#13
JLrumberger
closed
2 years ago
0
Additional checks for segmentation_data_prep.load_and_check_input
#12
JLrumberger
closed
1 year ago
0
Create release-drafter.yml
#11
srivarra
closed
2 years ago
0
Added check_input fn and tests
#10
JLrumberger
closed
2 years ago
0
Image augmentation pipeline
#9
JLrumberger
closed
2 years ago
1
Image augmentation pipeline
#8
JLrumberger
closed
2 years ago
0
Make marker activity GT masks
#7
JLrumberger
closed
2 years ago
0
Overview of tasks for model pipeline
#6
ngreenwald
opened
2 years ago
1
Calculate normalization matrix
#5
JLrumberger
closed
2 years ago
1
Data preparation
#4
JLrumberger
closed
2 years ago
0
Fix travis
#3
JLrumberger
closed
2 years ago
0
Add data prep
#2
JLrumberger
closed
2 years ago
0
Mibi Segmentation Dataloader
#1
JLrumberger
closed
2 years ago
1
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