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What is the purpose of this PR?
When an image has no fibers in it, calculate_fiber_alignment() errors out within segment_fibers() while processing the image.
This is an issue withpd.concat() attempting to be called on an empty list.
How did you implement your changes
Easy to fix by moving the calculate_fiber_alignment() call into the wrapper function run_fiber_segmentation() for all processing rather than individual image call. This was where the function was intended to be anyways
If you haven't already, please read through our contributing guidelines before opening your PR
What is the purpose of this PR? When an image has no fibers in it,
calculate_fiber_alignment()errors out withinsegment_fibers()while processing the image. This is an issue withpd.concat()attempting to be called on an empty list.How did you implement your changes
Easy to fix by moving the
calculate_fiber_alignment()call into the wrapper functionrun_fiber_segmentation()for all processing rather than individual image call. This was where the function was intended to be anywaysRemaining issues
N/A