angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
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Progress bars for spatial analysis #1019

Closed camisowers closed 1 year ago

camisowers commented 1 year ago

Is your feature request related to a problem? Please describe. While the cell diversity and cell distance computations are relatively quick, when processing an entire cohort it can take a couple hours and only users only have the subtle jupyter notebook indicators to know if it's still running.

Describe the solution you'd like It would be nice to track these computations with a progress bar. Possibly for neighborhood matrix generation as well.

Describe alternatives you've considered Let people live in suspense.

Additional context Will mirror the distance matrix progress bar.