angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
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Add progress bars in Cell Neighbors Analysis notebook #1022

Closed camisowers closed 1 year ago

camisowers commented 1 year ago

If you haven't already, please read through our contributing guidelines before opening your PR

What is the purpose of this PR?

Closes #1019. Adds progress bars for neighbors matrix generation, diversity analysis, and cell distance analysis. Also adds a fov description to the distance matrix progress bar.

How did you implement your changes

Use tdqm package.

Remaining issues

Any suggestions for other places in ark that could use a progress bar?