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angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
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Changing cmap colors in the visualization notebook #1040

Closed Zach-Sten closed 1 year ago

Zach-Sten commented 1 year ago

Hi all,

I was wondering if the code can be updated in the visualization notebook to allow users to change the cmap colors for their UMAP, PCA, and tsne plots. I was trying to do this myself and I couldn't seem to apply the cmap color gradients I was interested in.