angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
70 stars 25 forks source link

Fix color_map setting in visualization notebook #1043

Closed camisowers closed 1 year ago

camisowers commented 1 year ago

If you haven't already, please read through our contributing guidelines before opening your PR

What is the purpose of this PR?

Closes #1040. Allows users to change the colormap used for the dimensionality reduction plotting.

How did you implement your changes

The wrapper function visualize_dimensionality_reduction() was not actually passing the inputted color_map to plot_dim_reduced_data().

Remaining issues