Closed camisowers closed 11 months ago
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I think we should have a prefix so that all the masks are next to one another in alphabetical order when opening files in Mantis. Makes it easier to find the one you're looking for
I think we should have a prefix so that all the masks are next to one another in alphabetical order when opening files in Mantis. Makes it easier to find the one you're looking for
They all start with "population_" then with the suffix after - which will make them all easy to find I think? Since you're opening one FOV in mantis at a time anyways, you can just look for all the files that start with "population"
I think we should have a prefix so that all the masks are next to one another in alphabetical order when opening files in Mantis. Makes it easier to find the one you're looking for
Currently they all have a built in prefix of "population". So masks by default are population_pixel_mask.tiff
, population_cell_mask.tiff
, etc. We can change that to be something higher alphabetically if that would be more convenient.
Okay perfect
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What is the purpose of this PR?
Closes #669 and closes #1059. Creates a single top level mantis directory for notebooks 2, 3, and 4, to avoid duplicate files.
How did you implement your changes
_post_clustering_cell_mask
instead of just_cell_mask
to avoid overwriting notebook 3 cell cluster output files._generic_cell_mask
.Remaining issues