Closed camisowers closed 8 months ago
I was wondering whether this is now fixed in the newest release? I downloaded the latest version but am still experiencing the issue of incorrect cluster mapping in Mantis.
Hi @janinemelsen, the fix has just been merged into main! I was not included in the latest release, but if you're running ark from a local environment you can just pull the repository and update ark_env.
Please refer to our FAQ and look at our known issues before opening a bug report.
Describe the bug Currently, the
cell_cluster_mask.csv
that is generated and loaded into mantis does not contain the correct integer IDs for each cell cluster.Expected behavior When we updated the way we generate cell_masks to allow for colored masks, the integer IDs for the clusters changed. If before they were [1,4,10] they are now [1,2,3]. The currently saved
cell_meta_cluster_mapping.csv
does not reflect this change.To Reproduce Run cell clustering and create new metaclusters.