Closes #1097. Updates generate_cell_table to be compatible with updated ezSeg pipeline when nuclear masks need to be discarded.
How did you implement your changes
By default, the updated generate_cell_table loads in all the masks, including nuclear, and adds them to the cell table. For pixel clustering, only the whole cell data is needed, so if nuclear_counts=False, this mask type should not appear in the table.
What is the purpose of this PR?
Closes #1097. Updates
generate_cell_tableto be compatible with updated ezSeg pipeline when nuclear masks need to be discarded.How did you implement your changes
By default, the updated
generate_cell_tableloads in all the masks, including nuclear, and adds them to the cell table. For pixel clustering, only the whole cell data is needed, so ifnuclear_counts=False, this mask type should not appear in the table.Remaining issues
Integration testing with Pixie/Nimbus needed.