angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
72 stars 26 forks source link

Fix kmeans notebook mask generation #1130

Closed camisowers closed 5 months ago

camisowers commented 6 months ago

If you haven't already, please read through our contributing guidelines before opening your PR

What is the purpose of this PR?

Closes #1129. Fixes generate_and_save_neighborhood_cluster_masks() call in the kmeans notebook.

How did you implement your changes

Adds argument keywords to avoid incorrect ordering.

Remaining issues

N/A

review-notebook-app[bot] commented 6 months ago

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB